PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn373061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 121aa    MW: 13527.3 Da    PI: 9.8889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn373061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-094993244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+ E + + +a + +  +   +W+ +a+ +g g+t++++k ++
       Achn373061 49 GSWTAKENKAFEKALAVFDRDtpdRWHNVAKAVG-GKTAEEVKRHY 93
                     89*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.0446101IPR017884SANT domain
SMARTSM007173.0E-94799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-649103IPR009057Homeodomain-like
PfamPF002491.7E-74993IPR001005SANT/Myb domain
CDDcd001671.29E-75093No hitNo description
SuperFamilySSF466894.04E-1350104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSKTGFWHPH ERKCTVIGFG AHQILREDTV LNKTGMAQEM ASMSSRGSGS WTAKENKAFE  60
KALAVFDRDT PDRWHNVAKA VGGKTAEEVK RHYEILVEDV KHIEQGQVPF PNYRTTGKAK  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-3944117377RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088924.13e-41DnaJ homolog subfamily C member 2
SwissprotQ58FS32e-39RAD_ANTMA; Transcription factor RADIALIS
TrEMBLW9QGR53e-41W9QGR5_9R
STRINGPOPTR_0004s16270.14e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-37RAD-like 6